| Tool name | Exon Primer |
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| URL | http://ihg2.helmholtz-muenchen.de/ihg/ExonPrimer.html |
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| Important features | Designs primers to each exon region of the given target. |
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| Citations | |
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| Year of publication | Not available |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Junction primers, Masking the repeat sequence |
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| Category | Online, Free |
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| Features | 1. User needs to give cDNA and genomic sequence. Tool blast cDNA against genomic DNA sequence to identify the exon regions and then designs primers for each exons.
2. Allows the user to specify the exon length. Exons more than the specified length will be divided automatically by the tool.
3. Has an option to mask the repeat sequence. |
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| Description | For checking the specificity of primer pairs against non-target region. |
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